Publications

37 publications

Year	Title	Authors	Journal	DOI
2026	The genetic architecture of fibromyalgia across 2.5 million individuals	Kerrebijn, Isabel et al.	Nature Medicine	—
2026	Genetic variants affect diurnal glucose levels throughout the day	Sinnott-Armstrong, Nasa et al.	Nature Communications	—
2026	Participatory-informed preference optimization (PiPrO): A reinforcement learning simulation study	Templin, Tara et al.	PLOS Digital Health	—
2026	Meta-analysis of Cannabis Use Identifies Shared Genetic Loci with Sleep and Circadian Rhythms	Valliere, Jesse et al.	medRxiv	—
2026	An emergent disease-associated motor neuron state precedes cell death in ALS	Gautier, Olivia et al.	Cell	—
2026	Large language model-based bibliometric evaluation of population descriptors in human genetics	Gogarten, Stephanie M et al.	bioRxiv	—
2026	Pelvic and Inguinal Lymphadenopathy in a Murine Model of Lyme Disease: Is LD-Gynecological Pathology Immune-Mediated? 2257953	Pisani, Guido et al.	The Journal of Immunology	—
2026	From Collection to Collaboration: Building Ethical Frameworks for Genetic Research	Madden, Devin A et al.	Behavioral Medicine	—
2025	Lyme disease increases risk for multiple gynecological conditions	Hansen Colburn, Paige S et al.	medRxiv	—
2025	Genome-wide association study of long COVID	québécoise de la COVID, Banque et al.	Nature genetics	—
2025	Protect transgender scientists	Sinnott-Armstrong, Nasa et al.	Science	—
2025	Framework for bias evaluation in large language models in healthcare settings	Templin, Tara et al.	npj Digital Medicine	—
2025	Initial findings from the DecodeME genome-wide association study of myalgic encephalomyelitis/chronic fatigue syndrome	Boutin, Thiboud et al.	medRxiv	—
2025	Social Factors of Health Covary with Population Stratification and Confound Heritability Estimates	Liquori, JL et al.	—	—
2024	Nightmares share genetic risk factors with sleep and psychiatric traits	Ollila, Hanna M et al.	Translational Psychiatry	—
2024	SCGB1D2 inhibits growth of Borrelia burgdorferi and affects susceptibility to Lyme disease	Strausz, Satu et al.	Nature Communications	—
2024	Revealing the 2300-Year-Old Fermented Beverage in a Bronze Bottle from Shaanxi, China	Liu, Li et al.	Fermentation	—
2024	Genetic and functional analysis of Raynaud’s syndrome implicates loci in vasculature and immunity	Tervi, Anniina et al.	Cell Genomics	—
2024	Addressing 6 challenges in generative AI for digital health: A scoping review	Templin, Tara et al.	PLOS Digital Health	—
2024	Understanding genetic variants in context	Sinnott-Armstrong, Nasa et al.	eLife	—
2024	Sleep inertia drives the association of evening chronotype with psychiatric disorders: epidemiological and genetic evidence	Burns, Angus C et al.	medRxiv	—
2024	Queer-and trans-inclusive faculty hiring—A call for change	Weissman, JL et al.	PLoS biology	—
2023	Portability of Polygenic Risk Scores for Sleep Duration, Insomnia and Chronotype in 33,493 Individuals	Perkiö, Anna et al.	Clocks & Sleep	—
2023	A comprehensive rRNA variation atlas in health and disease	Rothschild, Daphna et al.	BioRxiv	—
2023	A non-coding variant linked to metabolic obesity with normal weight affects actin remodelling in subcutaneous adipocytes	Glunk, Viktoria et al.	Nature Metabolism	—
2023	Narcolepsy risk loci outline role of T cell autoimmunity and infectious triggers in narcolepsy	Ollila, Hanna M et al.	Nature communications	—
2023	Genome-wide Association Study of Long COVID	Lammi, Vilma et al.	medRxiv	—
2023	An epidemiological introduction to human metabolomic investigations	Joshi, Amit D et al.	Trends in Endocrinology & M…	—
2023	SIRP\alpha controls CD47-dependent platelet clearance in mice and humans	Shoham, Maia et al.	bioRxiv	—
2023	Metabolomic epidemiology offers insights into disease aetiology	Fuller, Harriett et al.	Nature metabolism	—
2023	Diversity of ribosomes at the level of rRNA variation associated with human health and disease	Rothschild, Daphna et al.	bioRxiv	—
2022	Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks	Freimer, Jacob W et al.	Nature Genetics	—
2022	Integrative analysis of metabolite GWAS illuminates the molecular basis of pleiotropy and genetic correlation	Smith, Courtney J et al.	bioRxiv	—
2022	A flexible modeling and inference framework for estimating variant effect sizes from GWAS summary statistics	Spence, Jeffrey P et al.	bioRxiv	—
2022	A conserved YAP/Notch/REST network controls the neuroendocrine cell fate in the lungs	Shue, Yan Ting et al.	Nature Communications	—
2022	Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits	Patel, Roshni A et al.	The American Journal of Hum…	—
2022	Large-scale genome-wide association study of coronary artery disease in genetically diverse populations	Tcheandjieu, Catherine et al.	Nature Medicine	—

Previous papers

60 papers from before the lab

Year	Title	Authors	Journal	DOI
2021	A genome-wide atlas of co-essential modules assigns function to uncharacterized genes	Wainberg, Michael et al.	Nature Genetics	—
2021	Sex-specific genetic effects across biomarkers	Flynn, Emily et al.	European Journal of Human G…	—
2021	GWAS of three molecular traits highlights core genes and pathways alongside a highly polygenic background	Sinnott-Armstrong, Nasa et al.	Elife	—
2021	Early Release-Performance of Nucleic Acid Amplification Tests for Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Prospectively Pooled Specimens	Wang, Hannah et al.	—	—
2021	Graphical analysis for phenome-wide causal discovery in genotyped population-scale biobanks	Amar, David et al.	Nature communications	—
2021	p53 is a central regulator driving neurodegeneration caused by C9orf72 poly (PR)	Maor-Nof, Maya et al.	Cell	—
2021	A regulatory variant at 3q21. 1 confers an increased pleiotropic risk for hyperglycemia and altered bone mineral density	Sinnott-Armstrong, Nasa et al.	Cell metabolism	—
2021	Tracing DNA paths and RNA profiles in cultured cells and tissues with ORCA	Mateo, Leslie J et al.	Nature Protocols	—
2021	Scaling of SARS-CoV-2 RNA in Settled Solids from Multiple Wastewater Treatment Plants to Compare Incidence Rates of Laboratory-Confirmed COVID-19 in Their Sewersheds	Wolfe, Marlene K et al.	Environmental Science & Tec…	—
2021	A large-scale multi-ethnic genome-wide association study of coronary artery disease	Assimes, Themistocles et al.	—	—
2021	Extensive pleiotropism and allelic heterogeneity mediate metabolic effects of IRX3 and IRX5	Sobreira, Débora R et al.	Science	—
2021	Discovering cellular programs of intrinsic and extrinsic drivers of metabolic traits using LipocyteProfiler	Strobel, Sophie et al.	bioRxiv	—
2021	Discovering cellular programs of intrinsic and extrinsic drivers of metabolic traits using LipocyteProfiler	Laber, S et al.	—	—
2020	Long-range single-molecule mapping of chromatin accessibility in eukaryotes	Shipony, Zohar et al.	Nature Methods	—
2020	Chromatin accessibility dynamics in a model of human forebrain development	Trevino, Alexandro E et al.	Science	—
2020	Analyses of non-coding somatic drivers in 2,658 cancer whole genomes	Rheinbay, Esther et al.	Nature	—
2020	Evaluation of Group Testing for SARS-CoV-2 RNA	Sinnott-Armstrong, Nasa et al.	medRxiv	—
2020	Dopaminergic stimulants and risk of Parkinson’s disease	Wainberg, Michael et al.	medRxiv	—
2020	Landscape of cohesin-mediated chromatin loops in the human genome	Grubert, Fabian et al.	Nature	—
2020	Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma	Cao, Wei et al.	Nature Communications	—
2020	Multiomic blood correlates of genetic risk identify presymptomatic disease alterations	Wainberg, Michael et al.	Proceedings of the National…	—
2020	SARS-CoV-2 RNA in wastewater settled solids is associated with COVID-19 cases in a large urban sewershed	Graham, Katherine E et al.	Environmental science & tec…	—
2020	Convergent mutations in tissue-specific regulatory regions reveal novel cancer drivers	Sinnott-Armstrong, Nasa et al.	bioRxiv	—
2020	A lead candidate functional single nucleotide polymorphism within the WARS2 gene associated with waist-hip-ratio does not alter RNA stability	Mušo, Milan et al.	Biochimica et Biophysica Ac…	—
2020	A microRNA linking human positive selection and metabolic disorders	Wang, Lifeng et al.	Cell	—
2020	Performance of Nucleic Acid Amplification Tests for Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Prospectively Pooled Specimens.	Wang, Hannah et al.	Emerging Infectious Diseases	—
2020	Pan-cancer analysis of whole genomes.	Hirano, Satoshi et al.	Nature	—
2019	Reduced signal for polygenic adaptation of height in UK Biobank	Berg, Jeremy J et al.	eLife	—
2019	Discovery of common and rare genetic risk variants for colorectal cancer	Huyghe, Jeroen R et al.	Nature genetics	—
2019	Opportunities and challenges for transcriptome-wide association studies	Wainberg, Michael et al.	Nature genetics	—
2019	The origins of specialized pottery and diverse alcohol fermentation techniques in Early Neolithic China	Liu, Li et al.	Proceedings of the National…	—
2019	Genetics of 38 blood and urine biomarkers in the UK Biobank	Sinnott-Armstrong, Nasa et al.	bioRxiv	—
2019	Neuronally Enriched RUFY3 Is Required for Caspase-Mediated Axon Degeneration	Hertz, Nicholas T et al.	Neuron	—
2019	Nightmares share strong genetic risk with sleep and psychiatric disorders	Ollila, Hanna M et al.	bioRxiv	—
2019	Cistrome Partitioning Reveals Convergence of Somatic Mutations and Risk Variants on Master Transcription Regulators in Primary Prostate Tumors	Mazrooei, Parisa et al.	Cancer cell	—
2019	Homogeneity in the association of body mass index with type 2 diabetes across the UK Biobank: A Mendelian randomization study.	Wainberg, M et al.	PLoS medicine	—
2018	Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival	Hornshøj, Henrik et al.	npj Genomic Medicine	—
2018	Diff-seq: A high throughput sequencing-based mismatch detection assay for DNA variant enrichment and discovery	Aggeli, Dimitra et al.	Nucleic acids research	—
2018	Loss of LDAH associated with prostate cancer and hearing loss	Currall, Benjamin B et al.	Human molecular genetics	—
2018	Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells	Bintu, Bogdan et al.	Science	—
2018	High-resolution genome-wide functional dissection of transcriptional regulatory regions and nucleotides in human	Wang, Xinchen et al.	Nature communications	—
2017	Predicting gene expression in massively parallel reporter assays: A comparative study	Kreimer, Anat et al.	Human mutation	—
2017	An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues	Corces, M Ryan et al.	Nature methods	—
2017	Reports from CAGI: The critical assessment of genome interpretation	Hoskins, Roger A et al.	Human mutation	—
2016	Breast cancer risk variants at 6q25 display different phenotype associations and regulate ESR1, RMND1 and CCDC170	Dunning, Alison M et al.	Nature genetics	—
2016	Noncoding somatic and inherited single-nucleotide variants converge to promote ESR1 expression in breast cancer	Bailey, Swneke D et al.	Nature genetics	—
2016	Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer	Sallari, Richard C et al.	BioRxiv	—
2015	Integrative analysis of 111 reference human epigenomes	Kundaje, Anshul et al.	Nature	—
2013	Cell-Based Metrics Improve the Detection of Gene-Gene Interactions Using Multifactor Dimensionality Reduction.	Fisher, Jonathan M et al.	EvoBIO	—
2012	GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures	Urbanowicz, Ryan J et al.	BioData mining	—
2012	BioLite, a Lightweight Bioinformatics Framework with Automated Tracking of Diagnostics and Provenance.	Howison, Mark et al.	TaPP	—
2011	Characterizing genetic interactions in human disease association studies using statistical epistasis networks	Hu, Ting et al.	BMC bioinformatics	—
2011	Random artificial incorporation of noise in a learning classifier system environment	Urbanowicz, Ryan et al.	Proceedings of the 13th ann…	—
2011	Multiple assessments of local properties, production, and performance in metal objects: an experimental case study from Petra, Jordan	Ryzewski, Krysta et al.	Archaeological and Anthropo…	—
2010	Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS	Greene, Casey S et al.	Bioinformatics	—
2010	Exploiting graphics processing units for computational biology and bioinformatics	Payne, Joshua L et al.	Interdisciplinary Sciences:…	—
2010	Fast genome-wide epistasis analysis using ant colony optimization for multifactor dimensionality reduction analysis on graphics processing units	Sinnott-Armstrong, Nasa et al.	Proceedings of the 12th ann…	—
2010	High performance parallel disease detection: an artificial immune system for graphics processing units	Sinnott-Armstrong, Nasa et al.	Computational Genetics Labo…	—
2010	Wording effects in moral judgments	O’Hara, Ross E et al.	Judgment and Decision Making	—
2009	Accelerating epistasis analysis in human genetics with consumer graphics hardware	Sinnott-Armstrong, Nasa et al.	BMC Research Notes	—